New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide
Increasing the throughput of sensitive proteomics by plexDIA | Nature Biotechnology
Ultra-fast proteomics with Scanning SWATH | Nature Biotechnology
IceR improves proteome coverage and data completeness in global and single-cell proteomics | Nature Communications
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics | Nature Methods
Mass-spectrometric exploration of proteome structure and function | Nature
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Nature Methods
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids | Nature Communications
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS | Scientific Data
Quantitative shotgun proteome analysis by direct infusion | Nature Methods
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity | Nature Communications
Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry: Trends in Plant Science
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
Time-resolved in vivo ubiquitinome profiling by DIA-MS reveals USP7 targets on a proteome-wide scale | Nature Communications
Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry | Analytical Chemistry
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics | Nature Communications
Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics | Nature Communications
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona | Nature Communications
Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries | Nature Communications
